Mostly fixed in ver 1y, but this cropped up in the newsgroup:
!NoteWorthyComposerClip(2.0,Single)
|Clef|Type:Treble
|Instrument|Name:"Flute"|Patch:73|Trans:0|DynVel:10,30,45,60,75,92,108,127|Pos:10
|TimeSig|Signature:4/4
|Bar|Style:MasterRepeatOpen
|Note|Dur:Half|Pos:-4^
|Note|Dur:Half|Pos:-4
|Bar
|Note|Dur:Half|Pos:-2^
|Note|Dur:Half|Pos:-2
|Bar
|Note|Dur:Half|Pos:0^
|Note|Dur:Half|Pos:0
|Key|Signature:Bb,Eb,Ab
|Bar
|Note|Dur:Whole|Pos:-2
|Bar|Style:MasterRepeatClose
!NoteWorthyComposerClip-End
By changing the KeySig, you can get all, some, or none or the notes to stick.
99.99% of the time you will want to repeat in the original key so you should restore the KeySig, but it should be fixed. This is a problem with D.S. flows as well.