User Tool Folder
This amounts to a lot of "configurable folders" for software that is generally easy to use. This is fine during the Beta stage while we sort out what is really necessary, but at some point some triage shold be applied.
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User Tools could happily co-exist in the 'Config' folder. I suspect that templates and itrees could as well.
Hmm, I know you don't like clutter, neither do I especially, but I think I would prefer to have some logical separation at a folder level than have a bunch of different function files all in one folder... For mine that would be worse clutter.
We have:
AutoSave
Config
itrees
SAMPLES
Scripts
Template
And if you've installed the user tools we add:
PHP
Perhaps Config and itrees could be combined - they are configuration related after all...
As for the rest, my preference is for them to remain as they are... They are all (except Scripts) user configurable anyway...